3B0Z

Crystal structure of cytoplasmic domain of FlhB from Salmonella typhimurium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins

Meshcheryakov, V.A.Kitao, A.Matsunami, H.Samatey, F.A.

(2013) Acta Crystallogr D Biol Crystallogr 69: 812-820

  • DOI: https://doi.org/10.1107/S0907444913002102
  • Primary Citation of Related Structures:  
    3B0Z, 3B1S

  • PubMed Abstract: 

    The membrane protein FlhB is a highly conserved component of the flagellar secretion system. It is composed of an N-terminal transmembrane domain and a C-terminal cytoplasmic domain (FlhBC). Here, the crystal structures of FlhBC from Salmonella typhimurium and Aquifex aeolicus are described at 2.45 and 2.55 Å resolution, respectively. These flagellar FlhBC structures are similar to those of paralogues from the needle type III secretion system, with the major difference being in a linker that connects the transmembrane and cytoplasmic domains of FlhB. It was found that deletion of a short flexible loop in a globular part of Salmonella FlhBC leads to complete inhibition of secretion by the flagellar secretion system. Molecular-dynamics calculations demonstrate that the linker region is the most flexible part of FlhBC and that the deletion of the loop reduces this flexibility. These results are in good agreement with previous studies showing the importance of the linker in the function of FlhB and provide new insight into the relationship between the different parts of the FlhBC molecule.


  • Organizational Affiliation

    Trans-Membrane Trafficking Unit, Okinawa Instiute of Science and Technology, Okinawa 904-0495, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein flhB52Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
Gene Names: flhB
UniProt
Find proteins for P40727 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P40727 
Go to UniProtKB:  P40727
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40727
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein flhB114Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 1 
Gene Names: flhB
UniProt
Find proteins for P40727 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P40727 
Go to UniProtKB:  P40727
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40727
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.232 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.102α = 90
b = 49.102β = 90
c = 143.045γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SHELXCDphasing
SHELXEmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-06-20
    Type: Initial release
  • Version 1.1: 2013-05-08
    Changes: Database references
  • Version 1.2: 2013-10-02
    Changes: Database references
  • Version 1.3: 2017-10-11
    Changes: Refinement description
  • Version 1.4: 2024-03-13
    Changes: Data collection, Database references, Derived calculations