3B07

Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus

Structural Biology Knowledgebase: 3B07 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3B07

Classification: TOXIN

Total Structure Weight: 274244.70

Macromolecule Entities
Molecule Chains Length Organism Details
Gamma-hemolysin component B A, C, E, G 309 Staphylococcus aureus
Gamma-hemolysin component A B, D, F, H 290 Staphylococcus aureus Gene Name(s): hlgA hlg2 SAV2419

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins

Protein Name: γ-hemolysin composed of LukF and Hlg2


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, C, E, G (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.207
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 206.45 α = 90.00
b = 206.14 β = 90.00
c = 190.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-06
  • Released Date: 2011-10-12
  • Deposition author(s): Yamashita, K., Kawai, Y., Tanaka, Y., Yao, M., Tanaka, I.

Revision History

  • 2011-12-21
    Type: Citation | Details: Citation update