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Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus
3B07
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Toxin
    Structure Weight: 274244.70
    Molecule: Gamma-hemolysin component B
    Polymer: 1 Type: protein Length: 309
    Chains: A, C, E, G
    Organism: Staphylococcus aureus subsp. aureus Mu50
    Gene Names: hlgB SAV2421
    UniProtKB: Protein Feature View | Search PDB | Q931F3  
    Molecule: Gamma-hemolysin component A
    Polymer: 2 Type: protein Length: 290
    Chains: B, D, F, H
    Organism: Staphylococcus aureus subsp. aureus Mu50
    Gene Names: hlgA hlg2 SAV2419
    UniProtKB: Protein Feature View | Search PDB | P0A071  
    Membrane Protein:   Source: mpstruc
    BETA-BARREL
    Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins
    γ-hemolysin composed of LukF and Hlg2
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Staphylococcus aureus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Staphylococcus aureus   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MPD
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    MPD C6 H14 O2
    (4S)-2-METHYL-2,4-PENTANEDIOL
    MPD:3B07
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yamashita, K.,  Kawai, Y.,  Tanaka, Y.,  Yao, M.,  Tanaka, I.

    Deposition:   2011-06-06
    Release:   2011-10-12
    Last Modified (REVDAT):   2011-12-21
     
  •   Revision History    Hide
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    2011-12-21
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.49
    R-Value: 0.207 (work)
    R-Free: 0.236
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 206.45 α = 90.00 
    b = 206.14 β = 90.00 
    c = 190.30 γ = 90.00