3ALQ

Crystal structure of TNF-TNFR2 complex

Structural Biology Knowledgebase: 3ALQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ALQ

Classification: CYTOKINE / CYTOKINE RECEPTOR

Total Structure Weight: 216742.40

Macromolecule Entities
Molecule Chains Length Organism Details
Tumor necrosis factor A, B, C..., D, E, FA, B, C, D, E, F 157 Homo sapiens Fragment: soluble form
Mutation: K11M, K65S, K90P, K98R, K112N, K128P
Gene Name(s): TNF Gene View TNFA TNFSF2
Tumor necrosis factor receptor superfamily member 1B R, S, T..., U, V, WR, S, T, U, V, W 173 Homo sapiens Fragment: residues in UNP 33-205
Gene Name(s): TNFRSF1B Gene View TNFBR TNFR2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

R, S, T, U, V, W COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.213
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.47 α = 90.00
b = 117.36 β = 90.00
c = 246.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-06
  • Released Date: 2010-11-17
  • Deposition author(s): Mukai, Y., Nakamura, T., Yamagata, Y., Tsutsumi, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4