3A0I

Human glucokinase in complex with a synthetic activator

Structural Biology Knowledgebase: 3A0I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3A0I

Classification: Transferase

Total Structure Weight: 51641.04

Macromolecule Entities
Molecule Chains Length Organism Details
Glucokinase X 455 Homo sapiens EC#: 2.7.1.2 IUBMB
Fragment: Enzyme, UNP residues 12-466
Gene Name(s): GCK Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AJI
Query on AJI

X 3-[(4-fluorophenyl)sulfanyl]-N-(4-methyl- 1,3-thiazol-2-yl)-6-[(4-methyl-4H-1,2,4-triazol- 3-yl)sulfanyl]pyridine-2-carboxamide
2,,3- thiazol-2-yl)-6-[(4-methyl-4H-1 (Synonym)
C19 H15 F N6 O S3
SJTQKYKXCYVFHX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

X ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

X SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AJI EC50: 250 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.226
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.73 α = 90.00
b = 79.73 β = 90.00
c = 321.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-19
  • Released Date: 2009-04-28
  • Deposition author(s): Kamata, K., Mitsuya, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4