3ZPS

Design and Synthesis of P1-P3 Macrocyclic Tertiary Alcohol Comprising HIV-1 Protease Inhibitors

Structural Biology Knowledgebase: 3ZPS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZPS

Classification: HYDROLASE

Total Structure Weight: 22388.70

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: L63P, V82T, I84V
Details: INHIBITOR COMPLEX
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EQM
Query on EQM

B methyl N-[(2S)-1-[2-[(4-bromophenyl)methyl]- 2-[(4R)-5-[[(2S)-3,3-dimethyl-1-oxidanylidene- 1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl- 5-oxidanylidene-4-(phenylmethyl)pentyl]hydrazinyl]- 3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate
C36 H52 Br N5 O6
SCBLWEFHRVDOAJ-DFNFTQNPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
EQM N/A in BindingDB
N/A in BindingMoad
Ki: 5.0 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.187
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.84 α = 90.00
b = 85.94 β = 90.00
c = 46.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-01
  • Released Date: 2013-11-06
  • Deposition author(s): Joshi, A., Veron, J.B., Unge, J., Rosenquist, A., Wallberg, H., Samuelsson, B., Hallberg, A., Larhed, M.

Revision History

  • 2013-12-11
    Type: Citation | Details: JRNL