Structure of E.coli rhomboid protease GlpG in complex with monobactam L61
3ZMJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 22101.86
    Molecule: RHOMBOID PROTEASE GLPG
    Polymer: 1 Type: protein Length: 179
    Chains: A
    EC#: 3.4.21.105   
    Fragment: CORE TM DOMAIN, RESIDUES 92-270
    Details: THE BETA LACTAM RING IS OPENED BY THE NUCLEOPHILIC ATTACK OF S201 ON C2-O1 TO FORM A COVALENT BOND
    Organism: Escherichia coli
    Gene Names: glpG b3424 JW5687
    UniProtKB: Search PDB | P09391   Protein Feature View
    Membrane Protein:   Source: inferred by homology
    ALPHA-HELICAL
    Intramembrane Proteases
    GlpG rhomboid-family intramembrane protease
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZMH   STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L62 
    3ZMI   STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29 
    3ZOT   STRUCTURE OF E.COLI RHOMBOID PROTEASE GLPG IN COMPLEX WITH MONOBACTAM L29 (DATA SET 2) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BNG
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    BNG C15 H30 O6
    B-NONYLGLUCOSIDE
    CL
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    CL Cl
    CHLORIDE ION
    L61
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    L61 C14 H19 N O3
    2-methylpropyl N-[(1R)-3-oxidanylidene-1- phenyl-propyl]carbamate
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    L61
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    L61
    N/Ain BindingDB
    N/Ain BindingMoad
    IC50: 11710 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Vinothkumar, K.R.,  Pierrat, O.,  Large, J.M.,  Freeman, M.

    Deposition:   2013-02-11
    Release:   2013-05-22
    Last Modified (REVDAT):   2013-08-28
     
  •   Revision History    Hide
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    2013-08-28
    Citation
    2013-05-29
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.198 (obs.)
    R-Free: 0.231
    Space Group: H 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 110.28 α = 90.00 
    b = 110.28 β = 90.00 
    c = 128.24 γ = 120.00