3ZK6

Crystal structure of Bcl-xL in complex with inhibitor (Compound 2).

Structural Biology Knowledgebase: 3ZK6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZK6

Classification: APOPTOSIS

Total Structure Weight: 42715.84

Macromolecule Entities
Molecule Chains Length Organism Details
BCL-2-LIKE PROTEIN 1 A, B 181 Homo sapiens Fragment: RESIDUES 1-40 AND 81-209
Details: DELETION MUTATION PERFORMED. TRUNCATION REMOVES RESIDUES 41-80, AND 210-233
Gene Name(s): BCL2L1 Gene View BCL2L BCLX

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
H1I
Query on H1I

A, B N-(3-(5-(1-(2-(benzo[d]thiazol-2-yl)hydrazono)ethyl)furan- 2-yl)phenylsulfonyl)-6-phenylhexanamide
C31 H30 N4 O4 S2
ZGVBPNIFKPDHBC-STKMKYKTSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
H1I N/A in BindingDB
Kd: 460 nM  BindingMOAD
Kd: 460 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.221
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.20 α = 90.00
b = 65.20 β = 90.00
c = 117.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-22
  • Released Date: 2013-04-24
  • Deposition author(s): Czabotar, P.E., Lessene, G.L., Smith, B.J., Colman, P.M.

Revision History

  • 2013-06-05
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Citation | Details: JRNL