3ZIA

The structure of F1-ATPase from Saccharomyces cerevisiae inhibited by its regulatory protein IF1

Structural Biology Knowledgebase: 3ZIA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZIA

Classification: HYDROLASE

Total Structure Weight: 761405.88

Macromolecule Entities
Molecule Chains Length Organism Details
ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL A, B, C..., K, L, MA, B, C, K, L, M 510 Saccharomyces cerevisiae Gene Name(s): ATP1 YBL099W YBL0827
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL D, E, F..., N, O, PD, E, F, N, O, P 478 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP2 YJR121W J2041
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL G, Q 278 Saccharomyces cerevisiae Gene Name(s): ATP3 ATP3a ATP3b YBR039W YBR0408
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL H, R 138 Saccharomyces cerevisiae Gene Name(s): ATP16 YDL004W D2935 YD8119.03
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL I, S 61 Saccharomyces cerevisiae Gene Name(s): ATP15 YPL271W P0345
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATPASE INHIBITOR, MITOCHONDRIAL J, T 63 Saccharomyces cerevisiae Fragment: INHIBITOR PROTEIN, UNP RESIDUES 23-75
Mutation: E21A
Gene Name(s): INH1 YDL181W D1305
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: F1-c-ring (c10) complex


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, K ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

B, C, D, E, F, L, M, N, O, P ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

C, L, M, O, P 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F, K, L, M, N, P MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 118.22 α = 90.00
b = 187.85 β = 89.96
c = 181.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-07
  • Released Date: 2013-02-13
  • Deposition author(s): Robinson, G.C., Bason, J.V., Montgomery, M.G., Fearnley, I.M., Mueller, D.M., Leslie, A.G.W., Walker, J.E.

Revision History

  • 2013-03-06
    Type: Citation | Details: JRNL