THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME
DOI:10.2210/pdb3zd5/pdb   NDB ID: NA2149
3ZD5
ENTRY 3ZD5 SUPERSEDES 2GOZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 20433.05
    Molecule: HAMMERHEAD RIBOZYME, ENZYME STRAND
    Polymer: 1 Type: rna Length: 43
    Chains: A
    Organism: synthetic construct
    Molecule: HAMMERHEAD RIBOZYME, SUBSTRATE STRAND
    Polymer: 2 Type: hybrid Length: 20
    Chains: B
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZD4   FULL-LENGTH HAMMERHEAD RIBOZYME WITH G12A SUBSTITUTION AT THE GENERAL BASE POSITION 
    3ZP8   HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GDP
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    GDP C10 H15 N5 O11 P2 G rnaLinking
    OMC
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    OMC C10 H16 N3 O8 P C rnaLinking
    5BU
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    5BU C9 H12 Br N2 O9 P U rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2149
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Martick, M.,  Scott, W.G.

    Deposition:   2012-11-24
    Release:   2012-12-12
    Last Modified (REVDAT):   2013-03-06

    Previous versions:  2GOZ
     
  •   Revision History    Hide
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    2013-03-06
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.20
    R-Value: 0.181 (obs.)
    R-Free: 0.212
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 49.89 α = 90.00 
    b = 69.21 β = 111.83 
    c = 60.08 γ = 90.00