3ZD5

THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME

Structural Biology Knowledgebase: 3ZD5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZD5

Classification: RNA

Total Structure Weight: 20433.07

Macromolecule Entities
Molecule Chains Length Organism Details
HAMMERHEAD RIBOZYME, ENZYME STRAND A 43 Synthetic construct
HAMMERHEAD RIBOZYME, SUBSTRATE STRAND B 20 Synthetic construct

Small Molecules
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
GDP
Query on GDP
A RNA LINKING C10 H15 N5 O11 P2 G
OMC
Query on OMC
B RNA LINKING C10 H16 N3 O8 P C
5BU
Query on 5BU
B RNA LINKING C9 H12 Br N2 O9 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.177
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.89 α = 90.00
b = 69.21 β = 111.83
c = 60.08 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-11-24
  • Released Date: 2012-12-12
  • Deposition author(s): Martick, M., Scott, W.G.
  • Previous versions: 2GOZ

Revision History

  • 2013-03-06
    Type: Other | Details: REMARK 900