3ZCJ

Crystal structure of Helicobacter pylori T4SS protein CagL in a tetragonal crystal form with a helical RGD-motif (6 Mol per ASU)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 3ZCJ

Classification: PROTEIN BINDING

Total Structure Weight: 153929.81

Macromolecule Entities
Molecule Chains Length Organism Details
CAGL A, B, C..., D, E, FA, B, C, D, E, F 220 Helicobacter pylori Fragment: RESIDUES 21-237
Details: PRIMARY AMINES (N-TERMINUS AND LYSINES) REDUCTIVELY METHYLATED
Gene Name(s): HP_0539
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B, F PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MLY
Query on MLY
A, B, C, D, E, F L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.205
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 197.12 α = 90.00
b = 197.12 β = 90.00
c = 106.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-20
  • Released Date: 2013-10-09
  • Deposition author(s): Barden, S., Niemann, H.H.

Revision History

  • 2013-11-27
    Type: Database references