3WDE

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A

Structural Biology Knowledgebase: 3WDE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.127

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3WDE

Classification: Chaperone / Antimicrobial protein

Total Structure Weight: 18212.08

Macromolecule Entities
Molecule Chains Length Organism Details
Probable ATP-dependent Clp protease ATP-binding subunit A 153 Mycobacterium tuberculosis Fragment: N-terminal domain, UNP residues 1-145
Mutation: F80Y
Gene Name(s): clpC1 Rv3596c MTCY07H7B.26
Cyclomarin A B 7 Streptomyces sp.

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001124 (VAL,ALA,WPA,WLU,MLE,WRP,WVL) B Cyclomarin A Cyclic peptide /
Antiinflammatory
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.127
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.02 α = 90.00
b = 58.86 β = 90.00
c = 63.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-14
  • Released Date: 2013-09-18
  • Deposition author(s): Vasudevan, D., Noble, C.G.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update