pore-forming CEL-III
3W9T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Toxin
    Structure Weight: 346937.07
    Molecule: Hemolytic lectin CEL-III
    Polymer: 1 Type: protein Length: 432
    Chains: A, B, C, D, E, F, G
    Fragment: UNP residues 12-432
    Mutation: N15S, Y16F, H36Y, M48I, L92Q, K95R, A97T, V122I, I146V, E173D, Q204S, S340T, I404V
    Organism: Cucumaria echinata
    Gene Name: cel3
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  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Cucumaria echinata   Taxonomy   Common Name: Sea cucumber  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    MG
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    MG Mg
    MAGNESIUM ION
    W9T
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    W9T C12 H22 O11
    4-O-beta-D-galactopyranosyl-beta-D-fructofuranose
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PCA
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    PCA C5 H7 N O3 GLU lPeptideLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Unno, H.,  Goda, S.,  Hatakeyama, T.

    Deposition:   2013-04-16
    Release:   2014-03-19
    Last Modified (REVDAT):   2014-05-21
     
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    2014-05-21
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.90
    R-Value: 0.241 (obs.)
    R-Free: 0.273
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 219.80 α = 90.00 
    b = 228.65 β = 127.13 
    c = 133.02 γ = 90.00