3W5H

Ultra-high resolution structure of NADH-cytochrome b5 reductase

Structural Biology Knowledgebase: 3W5H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.78 Å
  • R-Value Free: 0.144
  • R-Value Work: 0.126

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W5H

Classification: OXIDOREDUCTASE

Total Structure Weight: 32027.83

Macromolecule Entities
Molecule Chains Length Organism Details
NADH-cytochrome b5 reductase 3 A 272 Sus scrofa EC#: 1.6.2.2 IUBMB
Gene Name(s): CYB5R3 Gene View DIA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.78 Å
  • R-Value Free: 0.144
  • R-Value Work: 0.126
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.48 α = 90.00
b = 72.11 β = 90.00
c = 84.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-30
  • Released Date: 2013-07-17
  • Deposition author(s): Takeda, K., Ohno, H., Kosugi, M., Takaba, K., Miki, K.

Revision History

  • 2014-04-30
    Type: Citation | Details: Citation update