3W39

Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)

Structural Biology Knowledgebase: 3W39 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.295

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W39

Classification: IMMUNE SYSTEM

Total Structure Weight: 89732.29

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class I histocompatibility antigen, B-52 alpha chain A, D 277 Homo sapiens Fragment: EXTRACELLULAR RESIDUES 25-300
Gene Name(s): HLA-B Gene View HLAB
Beta-2-microglobulin B, E 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
peptid from Gag-Pol polyprotein C, F 8 Human immunodeficiency virus 1 EC#: 5.3.3.14 IUBMB
Gene Name(s): gag-pol


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.347
  • R-Value Work: 0.295
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 69.04 α = 90.00
b = 83.25 β = 90.00
c = 170.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-13
  • Released Date: 2013-02-13
  • Deposition author(s): Yagita, Y., Kuse, N., Kuroki, K., Gatanaga, H., Carlson, J.M., Chikata, T., Brumme, Z.L., Murakoshi, H., Akahoshi, T., Pfeifer, N., Mallal, S., John, M., Ose, T., Matsubara, H., Kanda, R., Fukunaga, Y., Honda, K., Kawashima, Y., Ariumi, Y., Oka, S., Maenaka, K., Takiguchi, M.

Revision History

No revisions since initial release