3W2F

Crystal structure of oxidation intermediate (10 min) of NADH-cytochrome b5 reductase from pig liver

Structural Biology Knowledgebase: 3W2F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3W2F

Classification: OXIDOREDUCTASE

Total Structure Weight: 32235.80

Macromolecule Entities
Molecule Chains Length Organism Details
NADH-cytochrome b5 reductase 3 A 271 Sus scrofa EC#: 1.6.2.2 IUBMB
Gene Name(s): CYB5R3 Gene View DIA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.164
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.46 α = 90.00
b = 73.01 β = 90.00
c = 85.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-28
  • Released Date: 2013-07-17
  • Deposition author(s): Yamada, M., Tamada, T., Matsumoto, F., Shoyama, Y., Kimura, S., Kuroki, R., Miki, K.

Revision History

  • 2014-04-30
    Type: Citation | Details: Citation update