3W2E

Crystal structure of oxidation intermediate (20 min) of NADH-cytochrome b5 reductase from pig liver


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 3W2E

Classification: OXIDOREDUCTASE

Total Structure Weight: 32235.57

Macromolecule Entities
Molecule Chains Length Organism Details
NADH-cytochrome b5 reductase 3 A 271 Sus scrofa EC#: 1.6.2.2 IUBMB
Gene Name(s): CYB5R3 Gene View DIA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.175
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.70 α = 90.00
b = 73.09 β = 90.00
c = 85.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-28
  • Released Date: 2013-07-17
  • Deposition author(s): Yamada, M., Tamada, T., Matsumoto, F., Shoyama, Y., Kimura, S., Kuroki, R., Miki, K.

Revision History

  • Version 1_0: 2013-07-17

    Type: Initial release

  • Version 1_1: 2014-04-30

    Type: Database references