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Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct
DOI:10.2210/pdb3vw3/pdb   NDB ID: NA1976
3VW3
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System/dna
    Structure Weight: 58903.88
    Molecule: Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
    Polymer: 1 Type: protein Length: 217
    Chains: L
    Organism: Mus musculus
    Molecule: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain)
    Polymer: 2 Type: protein Length: 220
    Chains: H
    Organism: Mus musculus
    Molecule: DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3')
    Polymer: 3 Type: dna Length: 18
    Chains: A
    Molecule: DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3')
    Polymer: 4 Type: dna Length: 18
    Chains: B
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy    
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1EHL  The related antibody Fab in complex with DNA (6-4) photoproduct 
    1KEG  The related antibody Fab in complex with DNA (6-4) photoproduct 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NCO
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    NCO Co H18 N6
    COBALT HEXAMMINE(III)
    NCO:3VW3
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    64T
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    64T C10 H17 N2 O9 P DT dnaLinking
    5PY
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    5PY C10 H15 N2 O7 P DT dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1976
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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