3VRP

Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-EGFR peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 3VRP

Classification: PROTEIN BINDING / Transferase

Total Structure Weight: 38356.71

Macromolecule Entities
Molecule Chains Length Organism Details
Signal transduction protein CBL-C A 331 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: tyrosine kinase binding domain
Gene Name(s): CBLC Gene View CBL3 RNF57
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Epidermal growth factor receptor B 13 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: phospho-EGFR peptide, UNP residues residues 1062-1074
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
B L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.177
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 93.36 α = 90.00
b = 108.71 β = 90.00
c = 54.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-13
  • Released Date: 2013-03-06
  • Deposition author(s): Takeshita, K., Tezuka, T., Isozaki, Y., Yamashita, E., Suzuki, M., Yamanashi, Y., Yamamoto, T., Nakagawa, A.

Revision History

  • Version 1_0: 2013-03-06

    Type: Initial release