3VQ6

HIV-1 IN core domain in complex with (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol

Structural Biology Knowledgebase: 3VQ6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQ6

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35231.27

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 158 Human immunodeficiency virus 1 Fragment: integrase core domain, UNP residues 770-927
Mutation: C56S, W131D, F139D, F185H
Gene Name(s): pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCK
Query on BCK

A (1-methyl-5-phenyl-1H-pyrazol-4-yl)methanol
C11 H12 N2 O
ZVGZXURABHDVPS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.45 α = 90.00
b = 61.93 β = 90.00
c = 81.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-20
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release