3VP6

Structural characterization of Glutamic Acid Decarboxylase; insights into the mechanism of autoinactivation

Structural Biology Knowledgebase: 3VP6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VP6

Classification: Lyase

Total Structure Weight: 117416.99

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate decarboxylase 1 A, B 511 Homo sapiens EC#: 4.1.1.15 IUBMB
Fragment: UNP residues 90-594
Mutation: C431H, G433S, P438Q, Q441H
Gene Name(s): GAD1 Gene View GAD GAD67

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HLD
Query on HLD

A, B 4-oxo-4H-pyran-2,6-dicarboxylic acid
C7 H4 O6
PBAYDYUZOSNJGU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A, B L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.197
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.01 α = 90.00
b = 64.08 β = 108.14
c = 102.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-27
  • Released Date: 2013-01-16
  • Deposition author(s): Langendorf, C.G., Tuck, K.L., Key, T.L.G., Rosado, C.J., Wong, A.S.M., Fenalti, G., Buckle, A.M., Law, R.H.P., Whisstock, J.C.

Revision History

  • 2013-08-14
    Type: Citation | Details: Citation update