3VJO

Crystal structure of the wild-type EGFR kinase domain in complex with AMPPNP.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 3VJO

Classification: TRANSFERASE

Total Structure Weight: 38484.13

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 334 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: kinase domain (UNP RESIDUES 695-1022)
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 143.36 α = 90.00
b = 143.36 β = 90.00
c = 143.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-27
  • Released Date: 2012-03-07
  • Deposition author(s): Yoshikawa, S., Kukimoto-Niino, M., Shirouzu, M., Semba, K., Yamamoto, T., Yokoyama, S.

Revision History

  • Version 1_0: 2012-03-07

    Type: Initial release

  • Version 1_1: 2013-06-26

    Type: Database references