3VGD

Ctystal structure of glycosyltrehalose trehalohydrolase (D252E)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 3VGD

Classification: HYDROLASE

Total Structure Weight: 65405.33

Macromolecule Entities
Molecule Chains Length Organism Details
Malto-oligosyltrehalose trehalohydrolase A 558 Sulfolobus solfataricus EC#: 3.2.1.141 IUBMB
Mutation: D252E
Gene Name(s): treZ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.158
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.88 α = 90.00
b = 78.88 β = 90.00
c = 282.53 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-09
  • Released Date: 2012-06-20
  • Deposition author(s): Okazaki, N., Tamada, T., Feese, M.D., Kato, M., Miura, Y., Komeda, T., Kobayashi, K., Kondo, K., Kuroki, R.

Revision History

  • Version 1_0: 2012-06-20

    Type: Initial release

  • Version 1_1: 2017-11-22

    Type: Refinement description