3VFZ

Crystal structure of -35 promoter binding domain of SigD of Mycobacterium tuberculosis

Structural Biology Knowledgebase: 3VFZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VFZ

Classification: TRANSCRIPTION

Total Structure Weight: 18938.70

Macromolecule Entities
Molecule Chains Length Organism Details
Probable RNA polymerase sigma-D factor A, B 86 Mycobacterium tuberculosis Fragment: UNP residues 141-212
Gene Name(s): sigD Rv3414c MTCY78.15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.198
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.43 α = 90.00
b = 35.70 β = 122.59
c = 50.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-10
  • Released Date: 2013-02-13
  • Deposition author(s): Jaiswal, R.K., Thakur, K.G., Gopal, B.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update