3VE0

Crystal structure of Sudan Ebolavirus Glycoprotein (strain Boniface) bound to 16F6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 3VE0

Classification: Immune system / viral protein

Total Structure Weight: 100542.34

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein I 298 Sudan ebolavirus Fragment: Sudan Boniface Glycoprotein
Mutation: Q95K, A203V, Q261H
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein J 167 Sudan ebolavirus Fragment: 16F6 chain A
Mutation: Q638V
Gene Name(s): GP
16F6 Antibody chain A A 220 Mus musculus Fragment: 16F6 chain B
16F6 Antibody chain B B 212 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

I, J N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

I, J ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.222
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 194.86 α = 90.00
b = 194.86 β = 90.00
c = 194.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-06
  • Released Date: 2012-04-18
  • Deposition author(s): Saphire, E.O., Bale, S., Dias, J.M.

Revision History

  • Version 1_0: 2012-04-18

    Type: Initial release

  • Version 1_1: 2012-04-25

    Type: Database references

  • Version 1_2: 2012-05-30

    Type: Database references