3VBF

Crystal structure of formaldehyde treated human Enterovirus 71 (space group I23)

Structural Biology Knowledgebase: 3VBF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VBF

Classification: VIRUS [ VIPERdb ]

Total Structure Weight: 93235.27

Macromolecule Entities
Molecule Chains Length Organism Details
Genome Polyprotein, capsid protein VP1 A 297 Enterovirus a Mutation: C225M
Details: STRAIN FUYANG, ANHUI. P.R.C/17.08/1
Genome Polyprotein, capsid protein VP2 B 245 Enterovirus a Details: STRAIN FUYANG, ANHUI. P.R.C/17.08/1
Genome Polyprotein, capsid protein VP3 C 242 Enterovirus a Details: STRAIN FUYANG, ANHUI. P.R.C/17.08/1
Genome Polyprotein, capsid protein VP4 D 58 Enterovirus a Details: STRAIN FUYANG, ANHUI. P.R.C/17.08/1

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
K
Query on K

A, C POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SPH
Query on SPH

A SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.236
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 600.10 α = 90.00
b = 600.10 β = 90.00
c = 600.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-02
  • Released Date: 2012-02-29
  • Deposition author(s): Wang, X., Peng, W., Ren, J., Hu, Z., Xu, J., Lou, Z., Li, X., Yin, W., Shen, X., Porta, C., Walter, T.S., Evans, G., Axford, D., Owen, R., Rowlands, D.J., Wang, J., Stuart, D.I., Fry, E.E., Rao, Z.

Revision History

  • 2012-04-25
    Type: Sequence database correspondence | Details: Change entity 4 to be consistent for all entities.
  • 2012-04-18
    Type: Citation | Details: Citation update
  • 2012-03-28
    Type: Citation | Details: Citation update