3V2P

COMPcc in complex with fatty acids

Structural Biology Knowledgebase: 3V2P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V2P

Classification: PROTEIN BINDING

Total Structure Weight: 26495.03

Macromolecule Entities
Molecule Chains Length Organism Details
Cartilage Oligomerization matrix protein (coiled-coil domain) A, B, C, D, E 45 Mus musculus Fragment: COMPcc
Details: COMPcc
Gene Name(s): Comp

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
STE
Query on STE

A STEARIC ACID
C18 H36 O2
QIQXTHQIDYTFRH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
STE N/A in BindingDB
Kd: 440 nM  BindingMOAD
Kd: 440 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.90 α = 90.00
b = 48.98 β = 104.07
c = 54.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-12
  • Released Date: 2013-01-16
  • Deposition author(s): Stetefeld, J.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update