3V2P

COMPcc in complex with fatty acids


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.207 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The pentameric channel of COMPcc in complex with different fatty acids.

MacFarlane, A.A.Orriss, G.Okun, N.Meier, M.Klonisch, T.Khajehpour, M.Stetefeld, J.

(2012) PLoS One 7: e48130-e48130


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cartilage Oligomerization matrix protein (coiled-coil domain)
A, B, C, D, E
45Mus musculusMutation(s): 0 
UniProt
Find proteins for Q9R0G6 (Mus musculus)
Explore Q9R0G6 
Go to UniProtKB:  Q9R0G6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9R0G6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
STE
Query on STE

Download Ideal Coordinates CCD File 
F [auth A]STEARIC ACID
C18 H36 O2
QIQXTHQIDYTFRH-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
STE PDBBind:  3V2P Kd: 440 (nM) from 1 assay(s)
Binding MOAD:  3V2P Kd: 440 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.207 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.9α = 90
b = 48.98β = 104.07
c = 53.997γ = 90
Software Package:
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2013-03-20
    Changes: Database references
  • Version 1.2: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description