3UZQ

Crystal structure of the dengue virus serotype 1 envelope protein domain III in complex with the variable domains of Mab 4E11

Structural Biology Knowledgebase: 3UZQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UZQ

Classification: IMMUNE SYSTEM

Total Structure Weight: 40655.77

Macromolecule Entities
Molecule Chains Length Organism Details
anti-dengue Mab 4E11 A 253 Mus musculus Fragment: Single chain variable fragment
envelope protein B 114 Dengue virus Fragment: domain III (UNP residues 576-680)

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.176
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 110.71 α = 90.00
b = 110.71 β = 90.00
c = 58.32 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-07
  • Released Date: 2012-02-22
  • Deposition author(s): Cockburn, J.J.B., Navarro Sanchez, M.E., Fretes, N., Urvoas, A., Staropoli, I., Kikuti, C.M., Coffey, L.L., Arenzana Seisdedos, F., Bedouelle, H., Rey, F.A.

Revision History

  • 2012-04-18
    Type: Citation | Details: Citation update