3UWL

Crystal structure of Enteroccocus faecalis thymidylate synthase (EfTS) in complex with 5-formyl tetrahydrofolate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 3UWL

Classification: TRANSFERASE

Total Structure Weight: 147717.39

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate synthase A, C 315 Enterococcus faecalis EC#: 2.1.1.45 IUBMB
Gene Name(s): thyA EF_1576
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Thymidylate synthase B, D 315 Enterococcus faecalis EC#: 2.1.1.45 IUBMB
Gene Name(s): thyA EF_1576

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FOZ
Query on FOZ

B, D N-[4-({[(6S)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8- hexahydropteridin-6-yl]methyl}amino)benzoyl]- L-glutamic acid
C20 H23 N7 O7
VVIAGPKUTFNRDU-STQMWFEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FOZ N/A in BindingDB
N/A in BindingMoad
Ki: 208000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CME
Query on CME
B, D L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.160
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 71.94 α = 90.00
b = 94.25 β = 95.01
c = 96.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-02
  • Released Date: 2012-08-29
  • Deposition author(s): Pozzi, C., Catalano, A., Cortesi, D., Luciani, R., Ferrari, S., Fritz, T., Costi, M.P., Mangani, S.

Revision History

  • 2013-01-23
    Type: Citation | Details: Citation update