3UTV

Crystal structure of bacteriorhodopsin mutant Y57F


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 3UTV

Classification: PROTON TRANSPORT

Total Structure Weight: 27875.87

Macromolecule Entities
Molecule Chains Length Organism Details
Bacteriorhodopsin A 249 Halobacterium salinarum Mutation: Y57F
Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MC3
Query on MC3

A 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
C36 H72 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.196
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 46.08 α = 90.00
b = 104.01 β = 90.00
c = 129.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-26
  • Released Date: 2012-05-09
  • Deposition author(s): Cao, Z., Bowie, J.U.

Revision History

  • 2014-07-16
    Type: Database references