3UPE

Bovine trypsin variant X(triplePhe227) in complex with small molecule inhibitor

Structural Biology Knowledgebase: 3UPE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UPE

Classification: HYDROLASE / HYDROLASE inhibitor

Total Structure Weight: 24274.44

Macromolecule Entities
Molecule Chains Length Organism Details
Cationic trypsin A 223 Bos taurus EC#: 3.4.21.4 IUBMB
Mutation: N97E, L99Y, Y172S, P173S, G174F, Q175I, S190A, V227F, V231L
Gene Name(s):

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0CA
Query on 0CA

A 1-[(7-carbamimidoylnaphthalen-2-yl)methyl]- 6-({1-[(1Z)-ethanimidoyl]piperidin-4-yl}oxy)- 2-(propan-2-yl)-1H-indole-4-carboxylic acid
C31 H35 N5 O3
WBDOXNXLJBVELO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.190
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.64 α = 90.00
b = 54.64 β = 90.00
c = 154.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-18
  • Released Date: 2012-11-21
  • Deposition author(s): Tziridis, A., Neumann, P., Kolenko, P., Stubbs, M.T.

Revision History

  • 2014-07-16
    Type: Citation | Details: Citation update