3UC0

Crystal structure of domain I of the envelope glycoprotein ectodomain from dengue virus serotype 4 in complex with the fab fragment of the chimpanzee monoclonal antibody 5H2

Structural Biology Knowledgebase: 3UC0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UC0

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 133366.59

Macromolecule Entities
Molecule Chains Length Organism Details
envelope protein A, B 165 Dengue virus Fragment: SEE REMARK 999
Gene Name(s):
Heavy chain, monoclonal antibody 5H2 H, I 236 Pan troglodytes Fragment: Fab
Light chain, monoclonal antibody 5H2 L, M 215 Pan troglodytes Fragment: Fab

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, H, I, M SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.94 α = 90.00
b = 113.86 β = 90.00
c = 169.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-25
  • Released Date: 2011-12-14
  • Deposition author(s): Cockburn, J.J.B., Stura, E.A., Navarro-Sanchez, M.E., Rey, F.A.

Revision History

  • 2012-02-15
    Type: Source and taxonomy | Details: Corrected source name
  • 2012-02-15
    Type: Citation | Details: Citation update