3UAJ

Crystal structure of the envelope glycoprotein ectodomain from dengue virus serotype 4 in complex with the fab fragment of the chimpanzee monoclonal antibody 5H2

Structural Biology Knowledgebase: 3UAJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.241

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UAJ

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 192140.97

Macromolecule Entities
Molecule Chains Length Organism Details
envelope protein A, B 433 Dengue virus Fragment: UNP residues 280-674
Gene Name(s):
Heavy chain, monoclonal antibody 5H2 C, H 236 Pan troglodytes Fragment: Fab
Light chain, monoclonal antibody 5H2 D, L 215 Pan troglodytes Fragment: Fab

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.241
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.11 α = 90.00
b = 134.75 β = 106.70
c = 106.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-21
  • Released Date: 2011-12-14
  • Deposition author(s): Cockburn, J.J.B., Stura, E.A., Navarro-Sanchez, M.E., Rey, F.A.

Revision History

  • 2012-02-15
    Type: Source and taxonomy | Details: Corrected source name
  • 2012-02-15
    Type: Citation | Details: Citation update