3U8U

Crystal structure of Human Apurinic/Apyridinimic Endonuclease, Ape1 in a new crystal form

Structural Biology Knowledgebase: 3U8U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U8U

Classification: HYDROLASE LYASE

Total Structure Weight: 213928.45

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-(apurinic or apyrimidinic site) lyase A, B, C..., D, E, FA, B, C, D, E, F 318 Homo sapiens EC#: 3.1 IUBMB 4.2.99.18 IUBMB
Gene Name(s): APEX1 Gene View APE APE1 APEX APX HAP1 Gene View REF1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B, C, F CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.84 α = 90.00
b = 97.28 β = 90.91
c = 132.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-17
  • Released Date: 2011-10-26
  • Deposition author(s): Agarwal, R., Naidu, M.D.

Revision History

No revisions since initial release