3U7B

A new crystal structure of a Fusarium oxysporum GH10 xylanase reveals the presence of an extended loop on top of the catalytic cleft


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 3U7B

Classification: HYDROLASE

Total Structure Weight: 186635.52

Macromolecule Entities
Molecule Chains Length Organism Details
ENDO-1,4-BETA-XYLANASE A, B, C, D, E 327 Fusarium oxysporum EC#: 3.2.1.8 IUBMB
Gene Name(s): FOXG_17421
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

B, D, E ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B, C, D, E BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.213
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 124.22 α = 90.00
b = 124.22 β = 90.00
c = 284.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-13
  • Released Date: 2012-07-18
  • Deposition author(s): Dimarogona, M., Topakas, E., Christakopoulos, P., Chrysina, E.D.

Revision History

  • Version 1_0: 2012-07-18

    Type: Initial release