3U21

Crystal structure of a Fragment of Nuclear factor related to kappa-B-binding protein (residues 370-495) (NFRKB) from Homo sapiens at 2.18 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 3U21

Classification: Transcription regulation DNA BINDING

Total Structure Weight: 29031.18

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear factor related to kappa-B-binding protein A, B 127 Homo sapiens Gene Name(s): NFRKB Gene View INO80G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET
MLY
Query on MLY
A, B L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 60.94 α = 90.00
b = 60.94 β = 90.00
c = 130.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-30
  • Released Date: 2011-11-02
  • Deposition author(s): Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)

Revision History

  • Version 1_0: 2011-11-02

    Type: Initial release

  • Version 1_1: 2012-10-10

    Type: Database references

  • Version 1_2: 2017-11-08

    Type: Refinement description