3TXZ

OYE1-W116Q complexed with R-carvone

Structural Biology Knowledgebase: 3TXZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TXZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 45644.97

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH dehydrogenase 1 A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Mutation: W116Q
Gene Name(s): OYE1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
07V
Query on 07V

A (5R)-2-methyl-5-(prop-1-en-2-yl)cyclohex- 2-en-1-one
R-carvone (Synonym)
C10 H14 O
ULDHMXUKGWMISQ-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.186
  • R-Value Work: 0.161
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.36 α = 90.00
b = 141.36 β = 90.00
c = 42.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-23
  • Released Date: 2012-09-26
  • Deposition author(s): Sullivan, B., Pompeu, Y.A., Stewart, J.D.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update