3TRZ

Mouse Lin28A in complex with let-7d microRNA pre-element

Structural Biology Knowledgebase: 3TRZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TRZ

Classification: RNA BINDING PROTEIN / RNA

Total Structure Weight: 137745.75


Macromolecule Entities
Molecule Chains Length Organism Details
Protein lin-28 homolog A A, B, C..., D, E, FA, B, C, D, E, F 148 Mus musculus Mutation: ΔK127, ΔN128, ΔM129, ΔQ130, ΔK131, ΔR132, ΔR133, ΔS134, ΔK135
Gene Name(s): Lin28a Lin28 Tex17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*GP*GP*CP*AP*GP*GP*GP*AP*UP*UP*UP*UP*GP*CP*CP*CP*GP*GP*AP*G)-3') U, V, W... , X, Y, Z U, V, W, X, Y, Z 21 synthetic preE-let-7d

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
GMP
Query on GMP
U, V, W, X, Y, Z NON-POLYMER C10 H13 N5 O5 --

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 143.82 α = 90.00
b = 143.82 β = 90.00
c = 177.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-11
  • Released Date: 2011-11-16
  • Deposition author(s): Nam, Y., Sliz, P.

Revision History

  • 2011-12-14
    Type: Citation | Details: Citation update
  • 2011-11-30
    Type: Citation | Details: Citation update