3TKJ

Crystal Structure of Human Asparaginase-like Protein 1 Thr168Ala

Structural Biology Knowledgebase: 3TKJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TKJ

Classification: HYDROLASE

Total Structure Weight: 66922.32

Macromolecule Entities
Molecule Chains Length Organism Details
L-asparaginase A, B 319 Homo sapiens EC#: 3.4.19.5 IUBMB 3.5.1.1 IUBMB
Mutation: T168A
Gene Name(s): ASRGL1 Gene View ALP CRASH

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAM
Query on TAM

A, B TRIS(HYDROXYETHYL)AMINOMETHANE
C7 H17 N O3
GKODZWOPPOTFGA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.168
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.68 α = 90.00
b = 111.37 β = 90.00
c = 119.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-26
  • Released Date: 2012-10-10
  • Deposition author(s): Li, W.Z., Yogesha, S.D., Liu, J., Zhang, Y.

Revision History

  • 2012-12-12
    Type: Citation | Details: Citation update