3SEF

2.4 Angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroE) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with shikimate and NADPH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 3SEF

Classification: OXIDOREDUCTASE

Total Structure Weight: 133936.80

Macromolecule Entities
Molecule Chains Length Organism Details
Shikimate 5-dehydrogenase A, B, C, D 302 Vibrio cholerae EC#: 1.1.1.25 IUBMB
Gene Name(s): aroE VC_0056
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SKM
Query on SKM

B, C (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE- 1-CARBOXYLIC ACID
SHIKIMATE (Synonym)
C7 H10 O5
JXOHGGNKMLTUBP-HSUXUTPPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 76.03 α = 90.00
b = 86.08 β = 92.85
c = 81.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-10
  • Released Date: 2011-07-27
  • Deposition author(s): Halavaty, A.S., Light, S.H., Minasov, G., Shuvalova, L., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2011-07-27

    Type: Initial release

  • Version 1_1: 2011-08-10

    Type: Data collection

  • Version 1_2: 2017-11-08

    Type: Refinement description