3SBL

Crystal Structure of New Delhi Metal-beta-lactamase-1 from Klebsiella pneumoniae

Structural Biology Knowledgebase: 3SBL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 3SBL

Classification: HYDROLASE

Total Structure Weight: 25292.44

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase NDM-1 A 237 Klebsiella pneumoniae EC#: 3.5.2.6 IUBMB
Fragment: sequence database residues 39-270
Gene Name(s): blaNDM-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 66.05 α = 90.00
b = 83.27 β = 90.00
c = 105.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-05
  • Released Date: 2011-06-29
  • Deposition author(s): Kim, Y., Tesar, C., Jedrzejczak, R., Babnigg, J., Binkowski, T.A., Mire, J., Sacchettini, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MT

Revision History

  • 2012-03-28
    Type: Citation | Details: Citation update
  • 2011-09-21
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4