3S88

Crystal structure of Sudan Ebolavirus Glycoprotein (strain Gulu) bound to 16F6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 3S88

Classification: IMMUNE SYSTEM / VIRAL PROTEIN

Total Structure Weight: 100098.87

Macromolecule Entities
Molecule Chains Length Organism Details
16F6 - Heavy chain H 220 Mus musculus Fragment: UNP Residues 32-313
Envelope glycoprotein I 298 Sudan ebolavirus Fragment: UNP Residues 473-639
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein J 167 Sudan ebolavirus Mutation: I631V, Q638V
Gene Name(s): GP
16F6 - Light chain L 212 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

I, J N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.222
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 193.59 α = 90.00
b = 193.59 β = 90.00
c = 193.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-27
  • Released Date: 2011-12-07
  • Deposition author(s): Saphire, E.O., Dias, J.M., Bale, S.

Revision History

  • 2011-12-21
    Type: Database references