3S83

EAL domain of phosphodiesterase PdeA

Structural Biology Knowledgebase: 3S83 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3S83

Classification: SIGNALING PROTEIN

Total Structure Weight: 28524.39

Macromolecule Entities
Molecule Chains Length Organism Details
GGDEF family protein A 259 Caulobacter vibrioides Fragment: EAL domain residues 289-547
Gene Name(s): CC_3396
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.168
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.19 α = 90.00
b = 46.96 β = 96.32
c = 63.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-27
  • Released Date: 2011-06-29
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Massa, C., Schirmer, T., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2016-10-12
    Type: Entry title | Details: --
  • 2016-08-31
    Type: Entry title | Details: --
  • 2011-07-27
    Type: Polymer description | Details: update sequence
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4