3S5W

Ornithine Hydroxylase (PvdA) from Pseudomonas aeruginosa

Structural Biology Knowledgebase: 3S5W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 3S5W

Classification: OXIDOREDUCTASE

Total Structure Weight: 107062.68

Macromolecule Entities
Molecule Chains Length Organism Details
L-ornithine 5-monooxygenase A, B 463 Pseudomonas aeruginosa EC#: 1.14.13.195 IUBMB
Gene Name(s): pvdA pvd-1 PA2386
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ONH
Query on ONH

A, B N~5~-hydroxy-L-ornithine
C5 H12 N2 O3
OZMJDTPATROLQC-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.192
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 130.94 α = 90.00
b = 130.94 β = 90.00
c = 318.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-23
  • Released Date: 2011-07-13
  • Deposition author(s): Olucha, J., Lamb, A.L.

Revision History

  • 2011-09-21
    Type: Citation | Details: Citation update
  • 2011-07-27
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4