3RY3

Putative solute-binding protein from Yersinia pestis.

Structural Biology Knowledgebase: 3RY3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 3RY3

Classification: TRANSPORT PROTEIN

Total Structure Weight: 117449.63

Macromolecule Entities
Molecule Chains Length Organism Details
Putative solute-binding protein A, B 528 Yersinia pestis Gene Name(s): oppA4 y1231 YP_2461 YPO2660
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 157.04 α = 90.00
b = 171.32 β = 90.00
c = 128.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-10
  • Released Date: 2011-05-18
  • Deposition author(s): Osipiuk, J., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4