Download MendeleySpecific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
Bhatt, V.S., Guan, W., G Wang, P.To be published.
3RU7
Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
- PDB DOI: https://doi.org/10.2210/pdb3RU7/pdb
- Classification: ISOMERASE
- Organism(s): Plesiomonas shigelloides
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-05-04 Released: 2011-05-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.270
- R-Value Work: 0.217
- R-Value Observed: 0.220
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| WbgU | 351 | Plesiomonas shigelloides | Mutation(s): 0 Gene Names: wbgU |  | |
UniProt | |||||
Find proteins for Q7BJX9 (Plesiomonas shigelloides) Explore Q7BJX9 Go to UniProtKB: Q7BJX9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7BJX9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | E [auth A], J [auth B], N [auth C], S [auth D] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| SO4 Query on SO4 | M [auth B], P [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GLY Query on GLY | F [auth A], R [auth D] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | ||
| NA Query on NA | G [auth A], H [auth A], L [auth B], Q [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | I [auth A], K [auth B], O [auth C], T [auth D] | Unknown ligand FKNQFGJONOIPTF-UHFFFAOYSA-N | |||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.270
- R-Value Work: 0.217
- R-Value Observed: 0.220
- Space Group: P 32
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.73 | α = 90 |
| b = 77.73 | β = 90 |
| c = 224.54 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
Entry History
Deposition Data
- Released Date: 2011-05-25 Deposition Author(s): Bhatt, V.S., Guan, W., Wang, P.G.
Revision History (Full details and data files)
- Version 1.0: 2011-05-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-01-24
Changes: Structure summary - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
