3RRN

S. cerevisiae dbp5 l327v bound to gle1 h337r and ip6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 3RRN

Classification: HYDROLASE

Total Structure Weight: 80854.00

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase DBP5 A 395 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Fragment: unp residues 91-482
Mutation: L327V
Gene Name(s): DBP5 RAT8 YOR046C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin GLE1 B 297 Saccharomyces cerevisiae Fragment: unp residues 244-538
Mutation: H337R
Gene Name(s): GLE1 Gene View BRR3 RSS1 YDL207W D1049
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IHP
Query on IHP

A, B INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.215
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 206.98 α = 90.00
b = 206.98 β = 90.00
c = 206.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-29
  • Released Date: 2011-05-18
  • Deposition author(s): Montpetit, B., Thomsen, N.D., Helmke, K.J., Seeliger, M.A., Berger, J.M., Weis, K.
  • Previous versions: 3PEX

Revision History

  • 2011-07-13
    Type: Version format compliance