3RQX

Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis in complex with P1,P4-Di(adenosine-5') tetraphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 3RQX

Classification: lyase / lyase substrate

Total Structure Weight: 32745.60

Macromolecule Entities
Molecule Chains Length Organism Details
ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE A 279 Bacillus subtilis EC#: 4.2.1.136 IUBMB
Gene Name(s): nnrD yxkO BSU38720
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B4P
Query on B4P

A BIS(ADENOSINE)-5'-TETRAPHOSPHATE
C20 H28 N10 O19 P4
YOAHKNVSNCMZGQ-XPWFQUROSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 91.58 α = 90.00
b = 91.58 β = 90.00
c = 168.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-28
  • Released Date: 2011-07-27
  • Deposition author(s): Shumilin, I.A., Cymborowski, M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2013-01-09
    Type: Citation | Details: Citation update
  • 2011-09-21
    Type: Polymer description | Details: --