3RQ2

Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis co-crystallized with ATP/Mg2+ and soaked with NADH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.153

Literature

Macromolecules
Sequence Display for 3RQ2

Classification: lyase / lyase substrate

Total Structure Weight: 31231.66

Macromolecule Entities
Molecule Chains Length Organism Details
ADP/ATP-dependent NAD(P)H-hydrate dehydratase A 279 Bacillus subtilis EC#: 4.2.1.136 IUBMB
Gene Name(s): nnrD yxkO BSU38720
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAX
Query on NAX

A BETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
C21 H31 N7 O15 P2
IDBZKGQRLBFUFQ-VPHRTNKSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 91.93 α = 90.00
b = 91.93 β = 90.00
c = 169.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-27
  • Released Date: 2011-07-27
  • Deposition author(s): Shumilin, I.A., Cymborowski, M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2013-01-09
    Type: Citation | Details: Citation update
  • 2011-09-21
    Type: Polymer description | Details: --