3RPC

The crystal structure of a possible metal-dependent hydrolase from Veillonella parvula DSM 2008


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 3RPC

Classification: HYDROLASE

Total Structure Weight: 119252.95

Macromolecule Entities
Molecule Chains Length Organism Details
possible metal-dependent hydrolase A, B, C, D 264 Veillonella parvula Gene Name(s): Vpar_0210
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.158
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.86 α = 90.00
b = 97.10 β = 90.00
c = 123.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-26
  • Released Date: 2011-05-11
  • Deposition author(s): Tan, K., Marshall, N., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4