3RK9

CDK2 in complex with inhibitor RC-2-74

Structural Biology Knowledgebase: 3RK9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RK9

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35024.03

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
09Z
Query on 09Z

A [4-amino-2-(propan-2-ylamino)-1,3-thiazol- 5-yl](pyridin-3-yl)methanone
C12 H14 N4 O S
PDIHMNDWUQWWNQ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
09Z N/A in BindingDB
N/A in BindingMoad
IC50: 520 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.50 α = 90.00
b = 71.70 β = 90.00
c = 72.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-17
  • Released Date: 2012-10-31
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

  • 2013-06-05
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update